SPICA: Surface Property fItting Coarse grAined model

Tutorialwith MD software

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Several different MD softwares are useful for an MD simulation using the SPICA force field:

LAMMPS is the first choice for the SPICA force field. GROMACS might show a better performance, though a patch file is required to make it useful. MPDyn2 was originally used to build the previous SDK force field, even though a good performance on parallel computers is not expected. MPDyn2 could be useful for analyses.
In this tutorial, we focus on LAMMPS and explain how to prepare input files for different systems.

Contents



Lipid membrane

Protein
pSPICA
tSPICA

SPICA Force Field

Okayama University